Cats-I: Cats' genome Informatics

Genome database for Felis catus

This web site contains genomic data obtained from the study for "AnAms1.0: A high-quality chromosome-scale assembly of a domestic cat Felis catus of American Shorthair breed" (Isobe, Matsumoto, Chung, Sakamoto, et al. BioRxiv, 2020. )

e.g.  kinase  PF01018  "GMP synthase"  AnAmsBeta_A1000100 
OR: topoisomerase gyrase (default behavior)      AND: +"elongation factor" +transcription (Add + to each keyword)
NOT: "elongation factor" -transcription (Add - to exclude from search)      Prefix search: ribosom* (ribosome, ribosomal, etc..)


Our cat

Name
Senzu
Breed
American Shorthair
Sex
Female
Genome specs.
20 sequences (19 chromosomes + 1 unplaced)
2.49 Gbp in total

Assembly and annotation version

The current version of the genome assembly is ver1.0 (AnAms1.0).
The genome sequences are also available from the INSDC under the accession number BioProject:PRJDB9879.
Note that the current gene annotation is still in Beta-version and is subject to change in future revisions.

Citation

The data provided in this web site is freely available for academic purposes. Please cite the preprint posted on BioRxiv if you use the data obtained from the web site. DOI: 10.1101/2020.05.19.103788

Inquiries and feedback

Genome Informatics Laboratory, National Institute of Genetis. yn @ nig.ac.jp